Pumpkin Chocolate Chip Muffins with Pecan Streusel

I wanted a warm, cozy pumpkin recipe the kids and I could all enjoy. This is it. Even the baby inhaled hers.

The crumb is soft and spiced, with chocolate chips and toasted pecans all the way through. On top goes a glazed pecan crumble, then a drizzle of maple syrup the minute they come out of the pan, and a sprinkle of flaky salt. Don’t skip the salt. It’s what brings them to life.

The base is adapted from Butternut Bakery. I bake a mile closer to the sun, so if you’re at high altitude too, my adjustments are in the notes.

Pumpkin Chocolate Chip Pecan Muffins

Soft spiced pumpkin muffins with chocolate chips, a glazed pecan crumble, maple syrup, and flaky salt.
Prep Time 30 minutes
Cook Time 25 minutes
Total Time 55 minutes
Servings: 16 Muffins
Course: Breakfast, Snack
Cuisine: American

Ingredients
  

Glazed pecan crumble
  • 1/2 cup chopped pecans
  • 2 tbsp butter
  • 3 tbsp packed light brown sugar
  • 1/4 tsp cinnamon
  • 1 Pinch salt
  • 2 tbsp flour
Muffins
  • 3/4 cup chopped pecans
  • 1 15 oz Can pumpkin puree, not pie filling
  • 1 cup granulated sugar
  • 1/2 cup packed light brown sugar
  • 1/2 cup vegetable
  • 2 large eggs
  • 1 tsp vanilla
  • 1/4 cup sour cream
  • 1 tsp baking powder
  • 1/2 tsp baking soda
  • 3/4 tsp cinnamon
  • 1/4 tsp ginger
  • 1 Pinch nutmeg
  • 1 Pinch cloves (or allspice)
  • 1/4 tsp kosher salt
  • 2 cups flour spooned and leveled
  • 1 cup semisweet chocolate chips
  • Maple Syrup for drizzling
  • Flaky Salt for sprinkling

Equipment

  • 1 12-cup Muffin Tin
  • 16 Paper Muffin Liners
  • 1 Skillet
  • 1 Parchment Paper
  • 1 Large Mixing Bowl
  • 1 Whisk
  • 1 Rubber Spatula
  • 1 Sharp Knife for Chopping

Method
 

  1. Toast the pecans. Put all 1 1/4 cups chopped pecans in a dry skillet over medium heat. Stir often for 4–6 minutes, until fragrant and a shade darker. Move 3/4 cup to a plate to cool. Leave 1/2 cup in the pan.
  2. Glaze the crumble pecans. Turn the heat to medium-low. Add the butter, 3 tbsp brown sugar, 1/4 tsp cinnamon and pinch of salt. Stir 1–2 minutes, until the sugar bubbles and coats the nuts. Don’t walk away; sugar burns fast.
  3. Cool and crumble. Spread the glazed pecans on parchment and let cool until firm, about 10 minutes. Break into small clusters and toss with 2 tbsp flour.
  4. Preheat. Heat the oven to 350°F (325°F for a dark metal pan). Lightly grease the top rims of a 12-cup and a 6-cup muffin tin (or plan to bake in two rounds) and line 16 cups with paper liners. Don’t skip the liners; without them the edges bake hard.
  5. Mix the wet ingredients. In a large bowl, whisk the pumpkin, both sugars, oil, eggs, vanilla and sour cream until smooth.
  6. Add leaveners and spices. Whisk in the baking powder, baking soda, cinnamon, ginger, nutmeg, cloves and salt.
  7. Add flour, chips and pecans. Whisk in the flour until about halfway combined. Add the chocolate chips and the cooled 3/4 cup pecans. Fold gently with a spatula and stop the moment no dry flour remains; overmixing causes tunnels and a dense crumb. Cover and let the batter rest 30 minutes.
  8. Fill and top. Divide the batter among the 16 liners, filling them nearly to the top. Scatter the glazed pecan crumble lightly over each. Don’t press it in.
  9. Bake 25–30 minutes, until a toothpick in the center comes out with a few moist crumbs. Check at 20 minutes; if the topping is browning fast, lay foil loosely over the tin.
  10. Finish and cool. While they’re still warm in the pan, drizzle with maple syrup and sprinkle with flaky salt. Let rest 5 minutes, then move to a rack.

Notes

Tip text
Flaky salt: don’t skip it. It cuts the sweetness and brings the whole muffin to life.
Swap: toasted pumpkin seeds can replace the pecans in the batter and the crumble. They toast faster than pecans, so pull them from the skillet when they start to pop.
Batter rest: the 30-minute rest lets the flour fully hydrate, which gives taller domes and a softer crumb.
Flour: spoon it into the cup and level it off. Scooped flour packs down and makes dry muffins.
Storage: once cool, store airtight right away, so the crust stays soft. They keep 2 days on the counter or about a week in the fridge. Warm 10 seconds in the microwave.
High-elevation adjustments (5,000–7,000 ft, dry climate)
Sugar: use 3/4 cup + 2 tbsp granulated sugar instead of 1 cup.
Flour: use 2 cups + 2 tbsp.
Leavening: keep the full 1 tsp baking powder and 1/2 tsp baking soda. Cutting them made a dense, flat batch.
Oven: bake 5 minutes at 400°F, then lower to 365°F for 15–20 minutes. In a dark metal pan, use 375°F, then 340°F, and start checking at 15 minutes.
Storage: dry air stales muffins fast, so move them to an airtight container as soon as they’re barely warm.

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